Biological computer uses DNA in calculations

The following is an excerpt.

A biological computer – the most advanced one ever developed – has been created by researchers from the Technion-Israel Institute of Technology in Haifa. This biological transducer is created using only biomolecules including DNA and enzymes. The device is able to read genetic code, carry out calculations and manipulate DNA to report its results.

The biomolecular computer could be used to detect DNA sequences, as well as to process and manipulate genetic code. Researchers believe that a sufficiently-advanced biological computer could have the computational power of a universal Turing machine, able to simulate other computers.

Read the full story here: Biological computer uses DNA in calculations

Food companies struggle to replace GM ingredients

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The following article is an edited excerpt.

Food companies big and small are struggling to replace genetically modified ingredients with conventional ones.

Pressure is growing to label products made from genetically modified organisms, or “GMOs.” In Connecticut, Vermont and Maine, at least one chamber of the state legislature has approved bills that would require the labeling of foods that contain genetically modified ingredients, and similar legislation is pending in more than two dozen other states. This weekend, rallies were held around the globe against producers of genetically altered ingredients, and consumers are threatening to boycott products that are not labeled.

And so, for many businesses, the pressing concern is just what it will take to gain certification as “non-GMO.”

Read the full story here: Seeking food ingredients that aren’t gene-altered

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Scientists discover molecular trigger for itching

The following is an edited excerpt.

Once thought to be a low-level form of pain, itch is instead a distinct sensation with a dedicated neural circuit linking cells in the periphery of the body to the brain, a study in genetically-modified mice suggests.

Mutant mice lacking one particular protein, called natriuretic polypeptide b, or Nppb, did not respond to itch-inducing compounds, but did respond normally to heat and pain. The researchers also found that when they injected Nppb in the mice’s necks, it put them into a self-scratching frenzy. This occurred both in the mutants and in control mice.

“Our research reveals the primary transmitter used by itch sensory neurons and confirms that itch is detected by specialized sensory neurons,” says Hoon.

Read the full article here: Scientists discover molecular trigger for itch: Identification of distinct neural circuit distinguishes the sensation from pain.

 

Debunking ‘the big lie’ about genetically engineered crops

The following is an edited excerpt.

Anti-GM activists will be out in full force on Saturday (25 May) for the “March Against Monsanto,” which will be marked by numerous events worldwide to protest the company’s prominence in the production of genetically engineered crop plants.

In the past, the participants in such events have resembled a cross between Halloween trick-and-treaters in weird costumes and the 19th century Luddites who destroyed labor-saving textile machinery.

But anti-genetic engineering activism is far from being all fun and games. When the activists are unable to sway public opinion with flagrant misrepresentations or to intimidate regulators into rejecting or delaying products, they often resort to harassment with nuisance lawsuits and even to vandalism of field trials.  Their stock in trade is The Big Lie – namely, that the application of molecular methods of genetic improvement is unwanted, unneeded, unsuccessful and unsafe.  These allegations have been debunked repeatedly over the years, as they are once again in a newly-released analysis from U.K.-based PG Economics and published in the peer reviewed scientific journal GM Crops.

Read the original article in its entirety here: Debunking ‘The Big Lie’ About Genetically Engineered Crops

Schizophrenia symptoms eliminated in genetically modified animal model

The following is an excerpt.

Overexpression of a gene associated with schizophrenia causes classic symptoms of the disorder that are reversed when gene expression returns to normal, scientists report.

They genetically engineered mice so they could turn up levels of neuregulin-1 to mimic high levels found in some patients then return levels to normal, said Dr. Lin Mei, Director of the Institute of Molecular Medicine and Genetics at the Medical College of Georgia at Georgia Regents University.

They found that when elevated, mice were hyperactive, couldn’t remember what they had just learned and couldn’t ignore distracting background or white noise. When they returned neuregulin-1 levels to normal in adult mice, the schizophrenia-like symptoms went away, said Mei, corresponding author of the study in the journal Neuron.

Read the full article here: Schizophrenia Symptoms Eliminated in Animal Model

First genomic survey of human skin fungal diversity

The following is an excerpt.

While humans have harnessed the power of yeast to ferment bread and beer, the function of yeast or other types of fungi that live in and on the human body is not well understood.  In the first study of human fungal skin diversity, National Institutes of Health researchers sequenced the DNA of fungi at skin sites of healthy adults to define the normal populations across the skin and to provide a framework for investigating fungal skin conditions.

“Applying DNA sequencing to a study of the skin’s fungi is the natural progression in understanding microbial life that co-exists on our bodies,” said NHGRI Scientific Director Daniel Kastner, M.D., Ph.D. “Along with recent genome sequencing to define bacterial diversity, this analysis of fungal diversity provides a more complete human microbiome picture.”

Read the full article here: NIH researchers conduct first genomic survey of human skin fungal diversity

Indonesia: Drought-resistant sugarcane plantation being developed

The following is an edited excerpt. 

The National Genetically Modified Product Biosafety Commission (KKHPRG) recently approved the first genetically-altered sugarcane crop, paving the way for the development of transgenic sugarcane for commercial production.

Bambang Purwantara, a member of the commission, said that the institutions which held the mandate to approve biotech plants had all given the nod to a drought-resistant transgenic sugarcane seed

The cane, developed by state plantation firm PT Perkebunan Nusantara, the Indonesian Sugarcane Plantation Research Center (P3GI) and experts from the State University of Jember in East Java, is currently under a limited field testing.

“We are proud to announce that the first biotech staple crop will be a drought-resistant sugarcane. We expect to see the transgenic sugarcane planted by next year at the latest,” Bambang explained.

Read the original article in its entirety here: Development underway for first transgenic sugarcane plantation

Ask a geneticist: Race and IQ?

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The following is an editorial summary.

Does race have a genetic basis? Does this genetic basis influence traits like intelligence? Are these even questions we should be asking?

After conservative scholar Jason Richwine was fired from The American Heritage Foundation for his controversial Harvard dissertation, “IQ and Immigration Policy,” the web has been abuzz with talk of genetics, intelligence, and IQ.

In an effort to provide some welcome clarity, The Atlantic’s Ta-Nehisi Coates sat down with geneticist Neil Risch, director of the Institute for Human Genetics at University of California San Francisco, for a Q&A.

Risch’s ultimate verdict?

[I]n my view, at this point, any comment about the etiology of group differences, for “intelligence” or anything else, in the absence of specific identified genes (or environmental factors, for that matter), is speculation.

Read the full story here: Race, Intelligence, and Genetics For Curious Dummies

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Errors cast doubt on landmark stem cell cloning paper

px Human embryonic stem cell colony phase

Just recently, a paper in Cell by Shoukhrat Mitalipov of the Oregon National Primate Research Center has been dominating all discussions — scientific, ethical, political — on the human side of genetics. It was, supposedly, the first proven case of successful human cloning. We’ve already written a feature about it and shared several stories on the topic here at the GLP.

Now the scientific backlash has begun. Any piece of science that ruffles this many features is bound to receive extra scrutiny from the scientific community … and the initial results are not good. Errors — sloppy, embarrassing errors — are coming to light. According to New Scientist, “anonymous scientists noted online that his paper contains duplicated and mislabeled images and plots.”

The author has apparently acknowledged that there are errors, and is working on preparing a proper statement with the editors of his journal. He stands by his original claim. The gist of the criticism is an old saw in the world of science: the author rushed to publication, got too excited, made sloppy mistakes. Reuters points out (rightfully so) that the paper’s three-day turn around in the peer-review process is almost unheard of, raising doubts about how well Cell handled the publication process as well.

The history of human stem cell cloning is already famous for one false start. In 2004, South Korean researcher Hwang Woo-suk became infamous after his proclaimed success at cloning human stem cells was proven fraudulent.

From here out, everything will be in the hands of Mitalipov’s fellow scientists. To his credit, Mitalipov had apparently been in just as much of a rush distribute the stem cell lines he used to encourage his colleagues to replicate his results. Whether or not anyone else is able to replicate his success will be the true test of his claim.

Hungary’s anti-science regime destroys all GMO corn fields

Hungary has destroyed 1000 acres of maize found to have been grown with genetically modified seeds. Unlike many European Union countries, Hungary is a nation where genetically modified (GM) seeds are banned. In a similar stance against GM ingredients, Peru has also passed a 10 year ban on GM foods.

Almost 1000 acres of maize found to have been ground with genetically modified seeds have been destroyed throughout Hungary, deputy state secretary of the Ministry of Rural Development Lajos Bognar said. The GMO maize has been ploughed under, said Lajos Bognar, but pollen has not spread from the maize, he added.

Unlike several EU members, GMO seeds are banned in Hungary. The checks will continue despite the fact that seek traders are obliged to make sure that their products are GMO free, Bognar said.

Read the original article in its entirety: Hungary Destroys All Monsanto GMO Corn Fields 

Largest genetic sequencing study of human disease to date completed

The following is an edited excerpt.

Researchers from Queen Mary, University of London have led the largest sequencing study of human disease to date, investigating the genetic basis of six autoimmune diseases – autoimmune thyroid disease, coeliac disease, Crohn’s disease, psoriasis, multiple sclerosis and type 1 diabetes.

The causes of each disease is unknown, but is believed to be a complex combination of genetic and environmental factors. The study published today in the journal Nature suggests that the genetic risk of these diseases more likely involves a complex combination of hundreds of weak-effect variants which are each common in the population.

Read the full article here: Researchers complete largest genetic sequencing study of human disease

California bill to prevent genetic testing without consent

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The following is an edited excerpt.

Most Californians are probably familiar with genetic testing companies such as 23AndMe that will screen customers’ DNA for their predisposition to cancer, diabetes, Parkinson’s, Alzheimer’s and a host of other diseases. But less known is that a growing number of firms are also offering paternity testing — with or without a person’s knowledge — as well as “infidelity testing,” in which an allegedly unfaithful partner’s underwear is secretly screened for genetic traces.

And under California law, such genetic snooping is perfectly legal.

Now, legislators in Sacramento are considering a bill to change that. Senate Bill 222, which faces a key hearing Thursday, would require a donor’s consent to collect, analyze or share genetic information.

Read the full article here: California bill would prevent genetic-testing firms from using surreptitiously obtained DNA

Gorillas and the future of crop biotechnology

The following article is an edited excerpt.

There are some really cool improvements coming along in several crops that have been developed using the tools of biotechnology – GMOs if you will.

Some of these innovations have consumer health benefits. Some expand ways to encourage greater produce consumption. Some reduce food waste. Some prevent crop losses through disease and reduce the need for copper sprays.

These traits represent an expansion of biotech beyond the major row crops primarily grown for animal feed or for fiber to crops like apples, oranges, tomatoes, pineapples and potatoes. Whether these new options actually make it to consumers depends a great deal on decisions that will be made by gorillas.

Read the original article in its entirety here: Gorillas And The Future Of Crop Biotechnology

BASF, Monsanto to launch drought tolerant GM corn in 2014

The following is an edited excerpt. 

BASF and Monsanto plan to commercially launch a drought-tolerant variety of genetically modified corn in the U.S. next year.

“We are working with Monsanto to develop a new GM corn variety, which is currently under trial and expected to be ready for launch next year,” BASF’s president for crop protection, Markus Heldt, said on the sidelines of a conference on food security.

The two companies have a revenue sharing arrangement, with 60% of revenue going to Monsanto and the rest to BASF.

Read the original article in its entirety here: BASF, Monsanto to launch drought tolerant GM corn in 2014 

Viewpoint: Debunking ‘the big lie’ about genetically engineered crops

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This article originally ran at Forbes and has been republished here with permission of the author.

In spite of two decades of stunning scientific, humanitarian and financial successes and an admirable record of health and environmental safety, the application of genetic engineering to agriculture is still beleaguered by activists. And they will be out in force on Saturday (25 May) for the “March Against Monsanto,” which will be marked by numerous events worldwide to protest the company’s prominence in the production of genetically engineered crop plants.

In the past, the participants in such events have resembled a cross between Halloween trick-and-treaters in weird costumes and the 19th century Luddites who destroyed labor-saving textile machinery.

But anti-genetic engineering activism is far from being all fun and games. When the activists are unable to sway public opinion with flagrant misrepresentations or to intimidate regulators into rejecting or delaying products, they often resort to harassment with nuisance lawsuits and even to vandalism of field trials.  Their stock in trade is The Big Lie – namely, that the application of molecular methods of genetic improvement is unwanted, unneeded, unsuccessful and unsafe.  These allegations have been debunked repeatedly over the years, as they are once again in a newly-released analysis from U.K.-based PG Economics and published in the peer reviewed scientific journal GM Crops.

Farmers certainly don’t believe that genetic engineering is unwanted, unneeded or unsuccessful.  The net economic benefit at the farm level in 2011 was $19.8 billion, equal to an average income premium of $329/acre.  For the 16 year period 1996-2011, the global farm income gain was $98.2 billion.  Of the total farm income benefit, 49% ($48 billion) was due to yield gains resulting from lower pest and weed pressure and improved genetics, with the balance arising from reductions in the cost of production.

The insect-resistance technology used in corn and cotton has consistently delivered yield gains from reduced pest damage.  The average yield gains over the 1996-2011 period across all users of this technology were 10.1% for insect-resistant corn and 15.8% for insect-resistant cotton.

What kinds of farmers benefit from genetically engineered crops?  About half (51%) of the 2011 farm income gains went to farmers in developing countries, 90% of whom are resource-poor, small operators. Cumulatively (1996-2011), the benefits were again divided about equally between farmers in developing and developed countries.

According to the PG Economics analysis (as well as many others), genetically engineered crops offer important benefits in addition to improvements to the bottom line.

First, their use has obviated the need to cultivate vast additional amounts of arable land.  Between 1996 and 2011, genetically engineered crops were responsible for the production of an additional 110 million tons of soybeans, 195 million tons of corn, 15.8 million tons of cotton lint and 6.6 million tons of canola.  If modern genetic engineering had not been available to the 16.7 million farmers using the technology in 2011, maintaining global production levels at the 2011 levels would have required additional plantings of 13.3 million acres of soybeans, 16.3 million acres of corn, 8.15 million acres of cotton and 490,000 acres of canola. This total area requirement is equivalent to 9% of the arable land in the United States.

Second, the cultivation of genetically engineered crops has reduced significantly the release of greenhouse gas emissions from agricultural practices.  This is due to less fuel use and additional sequestration of carbon from reduced tillage with the cultivation of genetically engineered crops, as compared to conventional varieties.  In 2011, this was equivalent to removing 23 billion kg of carbon dioxide from the atmosphere or to removing 10.2 million cars from the road for a year.

Third, the cultivation of pest-resistant genetically engineered crops reduced pesticide spraying by 474 million kg (-9%) between 1996 and 2011.  This decreased the environmental impact associated with herbicide and insecticide use on the area planted to genetically engineered crops by 18.1%.

Are genetically engineered products safe?  There is a long-standing consensus in the scientific community that the newer techniques of genetic engineering are essentially an extension, or refinement, of earlier methods for genetic improvement.  As long ago as 1989, a National Research Council analysis concluded, “Crops modified by molecular and cellular methods should pose risks no different from those modified by classical genetic methods for similar traits.  As the molecular methods are more specific, users of these methods will be more certain about the traits they introduce into the plants.”

And according to the Society of Toxicology, “There is no reason to suppose that the process of food production through biotechnology leads to risks of a different nature than those…created by conventional breeding.”

Even the notoriously risk-averse FDA “is not aware of any information showing that foods derived by these new methods (plant biotechnology) differ from other foods in any meaningful or uniform way, or that, as a class, foods developed by the new techniques present different or greater safety concern than foods developed by traditional plant breeding.”  For that reason, the FDA does not discriminate against genetic engineering techniques; rather, the degree of regulatory scrutiny depends on factors related to risk, such as whether a new food contains a substance completely new to the food supply, has higher levels of an endogenous toxin, or presents an allergen in an unexpected milieu.

When the naysayers remonstrate that genetically engineered foods have not been proven safe for human consumption, they are ignoring that to ensure their safety, all genetically engineered crops are extensively tested for toxins, allergens, and nutritional value before being marketed.  In fact, as a group, they are the most tested food products sold today.  Conventionally bred crops and varieties, in contrast, undergo no systematic, routine testing for safety or nutritional value; and several, including two varieties each of potatoes and squash and one of celery, have sickened or killed consumers.   Such mishaps are far less likely with the use of modern techniques of genetic engineering.

The antagonists of genetic engineering frequently call attention to the absence of human feeding studies of genetically engineered plants, but to anyone familiar with food science, that is an (obviously) unrealistic expectation.  The safety of any new genetically engineered crop is carefully tested in the laboratory, in the field, and in animals.  It is impossible, however, to design a meaningful long-term feeding test in humans, because it would require the intake of large amounts of a particular food or ingredient over a significant portion of the human life span. Who would be willing to consume for decades a fully standardized diet (essential if one wishes to compare groups and isolate the effects of the food under study) that is comprised of, say, 30 percent soybeans, corn or papaya?

This is why no existing food or food ingredient — conventional or genetically engineered — has been subjected to this type of testing.  Academic toxicologists and food safety officials around the world agree that long-term feeding tests in humans are not only virtually impossible to perform but are not necessary to establish safety.

Since 1996, there has also been an outpouring of data, including prodigious amounts of peer-reviewed risk-assessment research, that provides strong evidence in support of the safety of genetically engineered crops and the foods made from them.  During those 17 years, there has been no credible scientific evidence that genetically engineered foods or ingredients cause allergies or any other acute or long-term negative health effects.  Several trillion meals containing genetically engineered food ingredients have been consumed by people around the world, with not a single adverse effect documented.

None of these findings should be a surprise. For decades, the scientific community has regarded the use of molecular techniques for genetic engineering as part of a seamless continuum of the genetic improvement of plants – a refinement of earlier methods.

It’s long past time we got past the pseudo-controversies fomented by anti-technology activists and more fully exploited the commercial and humanitarian advantages of genetic engineering applied to agriculture.

Contributing author Graham Brookes is an economist and co-director of UK-based PG Economics Limited.

Henry I. Miller, a physician, is the Robert Wesson Fellow in Scientific Philosophy & Public Policy at Stanford University’s Hoover Institution.  He was the founding director of the FDA’s Office of Biotechnology. Follow him on Twitter @henryimiller.

The curious case of human gene patents

The following is an excerpt.

Critics who think the U.S. Patent Office has been too liberal in awarding protection for naturally occurring phenomena like human genes are watching Association for Molecular Pathology v. Myriad Genetics closely for signs the U.S. Supreme Court will tighten controls in this area. It’s an easy position to sympathize with; how can someone own the rights to a human gene?

But Myriad raises tough questions, including what happens to the 100,000 or so genetic patents already awarded.

Read the full story: The Curious Case of Human Gene Patents

Biologists engineer custom flu vaccine in a week

The following is an excerpt.

A copy of the genetic code of an H7N9 avian flu—similar to, but not exactly the same as the flu that has killed 36 people in China—arrived in a lab in Boston Easter Sunday, 2011. By Saturday, scientists had made a vaccine against it, the Boston Globe reported.

That turnaround time is weeks faster than the current best vaccine-making methods. The new shot-making strategy still needs to undergo approval from the U.S. Food and Drug Administration. It also needs tweaking before it would able to make the large amounts of vaccine needed during a flu outbreak, the editors of the journal Science wrote in a summary of the work. If the method does make it to market, however, it could speed the response to flu pandemics.

Read the full article here: Synthetic Biologists Engineer A Custom Flu Vaccine In A Week

Human genes: Has science outgrown patents?

The following is an excerpt.

Is it right to patent human genes? Both sides in a US law case have sound legal and policy arguments in their favour. But maybe neither is wrong, writes David Galloway.

A legal tussle in the US Supreme Court over who can own gene patents like the breast cancer gene has raised fundamental questions about what can be owned.

While the combatants – the Association for Molecular Pathology and Myriad Genetics – hone their arguments, the rest of us should pause to consider how we got here and whether it’s time to change the law.

Read the full story: Has Science Outgrown Patents?

Genome sequencing should be universal, benefitting all

The following is an excerpt.

The promise of personalized medicine with genome sequencing might soon imbue humanity with terrific powers to prevent, diagnose, and treat disease — with perhaps also the ability to gain insight into ourselves and our genetic place within the collective.

In the United Kingdom, the government has committed more than $150 million to sequence 100,000 genomes within the National Health System, allowing researchers to gain clinically relevant data across a large patient population. John Burn, a professor at Newcastle University’s Institute of Genetic Medicine, wrote an editorial published Tuesday in the British Medical Journal extolling the benefits of genome sequencing, to be followed by a rebuttal.

Burn acknowledges that while privacy abuses might be a concern, the benefits to gene sequencing for the individual and population would be manifold, with partnerships among government and pharmaceutical companies potentially yielding new drugs and devices targeting genetic subgroups, including those one in every 17 people with a genetic predisposition for disease.

Read the full story: Genome Sequencing Should Become Universal, Benefiting All, Researcher Says

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